NEWS
Take a virtual tour around the UNLOCK facilities
- December 21, 2023
UNLOCKtober has arrived!
- October 2, 2023
UNLOCK Symposium: registration is now open
- September 12, 2023
Vacancy: Post-doc researcher for UNLOCK large-scale research infrastructure
- August 18, 2023
Event: Looking for key partners!
- February 16, 2023
What is UNLOCKtober
- October 1, 2022
Celebrating microbial team play on World Microbiome Day
- June 27, 2022
UNLOCK celebrates International Microorganism Day
- September 14, 2021
UNLOCK celebrates World Microbiome Day
- June 27, 2021
Microbes matter
BLOGS
UNLOCKtober has arrived!
- October 2, 2023
New publication: The FAIR Data Station
- April 13, 2023
A Winogradsky Column to visualize microbial processes towards remediation in the Griftpark
- October 28, 2022
What is UNLOCKtober
- October 1, 2022
Celebrating microbial team play on World Microbiome Day
- June 27, 2022
Recording, analyzing and storing data in the FAIR Data Platform
- June 20, 2022
Mixing and matching teams with the Modular Bioreactor Platform
- June 13, 2022
Comparing under different conditions in the Parallel Cultivation Platform
- June 7, 2022
Discovering unexpected talents in the Biodiscovery Platform
- May 30, 2022
UNLOCKing microbial potential: Team play is key
- May 23, 2022
PUBLICATIONS
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Metagenomic insights into the microbial cooperative networks of a benz(a)anthracene-7,12-dione degrading community from a creosote-contaminated soil
Sara N. Jiménez-Volkerink, Maria Jordán, Hauke Smidt, Cristina Minguillón, Joaquim Vila, Magdalena Grifoll, Science of The Total Environment, Volume 907, 2024, 167832
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Dynamic genome-scale modeling of Saccharomyces cerevisiae unravels mechanisms for ester formation during alcoholic fermentation
Scott, W. T., Henriques, D., Smid, E. J., Notebaart, R. A., & Balsa-Canto, E. (2023). Biotechnology and Bioengineering, 120, 1998–2012
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Exploitation of microbial activities at low pH to enhance planetary health
Merve Atasoy, Avelino Álvarez Ordóñez, Adam Cenian, Aleksandra Djukić-Vuković, Peter A Lund, Fatih Ozogul, Janja Trček, Carmit Ziv, Daniela De Biase, FEMS Microbiology Reviews, 2023
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Impact of wastewater characteristics on the removal of organic micropollutants by Chlorella sorokiniana
Kaiyi Wu, Merve Atasoy, Hans Zweers, Huub Rijnaarts, Alette Langenhoff, Tânia V. Fernandes, Journal of Hazardous Materials, Volume 453, 2023, 131451
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Advances in environmental bioprocess technology for an effective transition to a green circular economy
Merve Atasoy, Current Developments in Biotechnology and Bioengineering, Elsevier, 2023, Pages 291-314, ISBN 9780323999205
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A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia
William T. Scott Jr., Sara Benito-Vaquerizo, Johannes Zimmermann, Djordje Bajić, Almut Heinken, Maria Suarez-Diez, Peter J. Schaap. PLoS Comput Biol 19(8): e1011363
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Microbial dynamics and bioreactor performance are interlinked with organic matter removal from wastewater treatment plant effluent
M. Atasoy, W.T. Scott J, K. van Gijn, J.J. Koehorst, H. Smidt, A.A.M. Langenhoff, Bioresource Technology 372 (2023) 128659
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FAIR data station for lightweight metadata management and validation of omics studies
Bart Nijsse, Peter J Schaap, Jasper J Koehorst. GigaScience, Volume 12, 2023, giad014
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Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning.
Wasin Poncheewin, Anne D. van Diepeningen, Theo A. J. van der Lee, Maria Suarez-Diez & Peter J. Schaap. Sci Rep 12, 10857 (2022)
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Dynamic metabolic interactions and trophic roles of human gut microbes identified using a minimal microbiome exhibiting ecological properties
Sudarshan A. Shetty, Ioannis Kostopoulos, Sharon Y. Geerlings, Hauke Smidt, Willem M. de Vos & Clara Belzer. The ISME Journal (2022)
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Assembly and comparison of Ca. Neoehrlichia mikurensis genomes
Azagi, Tal, Ron P. Dirks, Elena S. Yebra-Pimentel, Peter J. Schaap, Jasper J. Koehorst, Helen J. Esser, and Hein Sprong. 2022. Microorganisms 10, no. 6: 1134
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Inter-species metabolic interactions in an in-vitro minimal human gut microbiome of core bacteria
Sudarshan A. Shetty, Ben Kuipers, Siavash Atashgahi, Steven Aalvink, Hauke Smidt and Willem M. de Vos. npj Biofilms Microbiomes 8, 21 (2022)
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A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
Andra Waagmeester, Egon L. Willighagen, Andrew I. Su, Martina Kutmon, Jose Emilio Labra Gayo, Daniel Fernández-Álvarez, Quentin Groom, Peter J. Schaap, Lisa M. Verhagen & Jasper J. Koehorst. BMC Biol 19, 12 (2021)
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Experimental infrastructure requirements for quantitative research on microbial communities
Robbert Kleerebezem, Gerben Stouten, Jasper Koehorst, Alette Langenhoff, Peter Schaap, Hauke Smidt. Current Opinion in Biotechnology. Volume 67, February 2021, Pages 158-165
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Machine learning approaches to predict the plant-associated phenotype of Xanthomonas strains
Dennie te Molder, Wasin Poncheewin, Peter Schaap, and Jasper Koehorst. BMC Genomics 22, 848 (2021)
OTHER MEDIA
- National Roadmap video for NWO (made by Public Cinema)
- Hauke Smidt explains the concept of UNLOCK
- Animation explaining UNLOCK (by Folded Paper)
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Recent Posts
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Take a virtual tour around the UNLOCK facilitiesDecember 21, 2023/0 Comments
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UNLOCKtober has arrived!October 2, 2023/
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UNLOCK Symposium: registration is now openSeptember 12, 2023/